애기장대 연구방법

• 종자 돌연변이 관찰: SeedGenes Tutorial

생물정보

•   Arabidopsis Acyl-lipid metabolism - http://aralip.plantbiology.msu.edu/pathways/pathways
• The Arabidopsis Imformation resources (TAIR) - https://www.arabidopsis.org/
• National Center for Biotrchnology Information (NCBI) - http://www.ncbi.nlm.nih.gov/
• T-DNA Express(SIGnAL) - http://signal.salk.edu/cgi-bin/tdnaexpress
• US. National Plant Germplasm System- https://npgsweb.ars-grin.gov/gringlobal/search.aspx
• 농업생명자원센터 -http://genebank.rda.go.kr/
• 농업과학도서관 -http://lib.rda.go.kr/main.do

식물 Genome정보

• Phytozome11 - https://phytozome.jgi.doe.gov/pz/portal.html#!info?alias=Org_Csativus
• Cucurbit Genomics Databases - http://www.icugi.org/cgi-bin/ICuGI/index.cgi
• MeloGene - https://melogene.upv.es/
• 들깨 유전자 검색-http://seeders.iptime.org:6380/blast/pfrDB/blast/4n_result.html
• 카멜리나 유전자 검색- http://camelinagenomics.org/index.php?a=view
• 식물 DNA C값-http://data.kew.org/cvalues/
• Castor genome-http://www.plantgdb.org/RcGDB/
• Castor Blast-http://blast.jcvi.orghttp://blast.jcvi.org/er-blast/index.cgi?project=rca1
• 들깨 레퍼런스 지놈 
• 들깨 유전체 functional_annotation

• Pennycress Genomics (Uof Minnesota)  Pennycress Home (umn.edu)
• Index of /genomes/all/GCA/911/865/555/GCA_911865555.2_T_arvense_v2 (nih.gov)
  
• Phytozome13 database ; https://phytozome-next.jgi.doe.gov/info/Tarvense_v1_1
  

Soybean database

• SoyBase (RNAseq)-https://soybase.org/soyseq/
• GmGDB-http://www.plantgdb.org/GmGDB/

Nicotiana benthamiana Genome

• N.benthamiana blast-https://solgenomics.net/tools/blast/?db_id=266
• Sol Genomics Network-https://solgenomics.net/organism/Nicotiana_benthamiana/genome

유전자분석 (단백질 분석)

• ClustalW-http://www.genome.jp/tools/clustalw/
• Boxshade-http://www.ch.embnet.org/software/BOX_form.html
• CBS Prediction-http://www.cbs.dtu.dk/services/
• NEGA7-http://www.megasoftware.net/
• Blast2GO-https://www.blast2go.com/
• PSORT-https://psort.hgc.jp/
• TargetP1.1-http://www.cbs.dtu.dk/services/TargetP/
• PlantTFDB-http://planttfdb.cbi.pku.edu.cn/
• Mocker Lab (Diurnal)- http://diurnal.mocklerlab.org/
• Multiple sequence alignment-https://www.ebi.ac.uk/Tools/msa/muscle/
• Hydrophobic & charge distribution (ExPASy)-https://www.expasy.org/
• Protein MW & isoelectrical point (ProParam)-https://web.expasy.org/protparam/
• Secondary and tertiary structure(SOPMA)-https://npsa-prabi.ibcp.fr/cgi-bin/npsa_automat.pl?page=/%20NPSA/npsa_sopma.html
• Transmembrane prediction (TMHMM2.0)-http://www.cbs.dtu.dk/services/

식물 대사

• Kansas Lipodomics 센터(lipid 분리 및 분석 방법) -https://www.k-state.edu/lipid/analytical_laboratory/protocols_and_methodology/lipid_extraction_arabidopsis_leaves/index.html
• Arabidospis Isoprenoid Pathway Database (AtIPD)- http://www.atipd.ethz.ch
• AraCyc- http://www.arabidopsis.org/biocyc
• KEGG- http://www.genome.jp/kegg
• SUBA- http://www.suba.plantenergy.uwa.edu.au
• AtCHLORO- http://www.grenoble.prabi.fr/at_chlroro
• MASCP Gator web portal -http://gator.mascproteomics.org

• PlantGDB_ PlantGDB - Resources for Plant Comparative Genomics
• Phytozome_Phytozome v12.1: Home (doe.gov)
• Ensembl Plants _Ensembl Plants
  

분자마커 개발




• dCAPS Finder 2.9 http://helix.wustl.edu/dcaps/dcaps.html

유전자 편집

• CRISPR-P http://cbi.hzau.edu.cn/crispr/
• CRISPR-Plant  http://www.genome.arizona.edu/crispr/CRISPRsearch.html
• ATUM  https://www.atum.bio/eCommerce/cas9/input
• Poly peak parser http://yosttools.genetics.utah.edu/PolyPeakParser/
• TIDE TIDE (nki.nl)
• Cas13 https://zlab.bio/cas13

병저항성 연구

• Plant R-gene database http://prgdb.crg.eu/wiki/Main_Page

• Melonomics https://melonomics.net/

생물정보학 기초사이트

•  [초심자를 위한 생물학+정보학]

http://www.ibric.org/myboard/read.php?Board=news&id=252834

http://www.ibric.org/myboard/list.php?Board=news&PARA3=10

• 통계 tools

https://www.graphpad.com/quickcalcs/

식물학의 필수 코스

• Teaching Tools in Plant  Biology

http://www.plantcell.org/site/teachingtools/teaching.xhtml

분자생물학 프로토콜

• addgene  https://www.addgene.org/
• bio-protocol  http://www.bio-protocol.org/fllist.aspx?fl2=147&weekcount=22
• ChIP assay http://www.koramlabtech.co.kr/web/bbs/board.php?bo_table=21&wr_id=36&page=

• Plant polar lipid TLC-GC anaysis https://www.jove.com/video/2518/arabidopsis-thaliana-polar-glycerolipid-profiling-thin-layer

광합성 세균

• CYORF  http://cyano.genome.jp/
• CyanoE http://cyanoexpress.sysbiolab.eu/

클라미도모나스

• MycoCosm https://genome.jgi.doe.gov/Chlre4/Chlre4.home.html
• Chamydomonas genome http://www.plantgdb.org/CrGDB/
• Chlamy Library Mutants  https://www.chlamycollection.org/20000-chlamy-library-mutants-available/

상분리 연구 

• 관련 사이트 링크: http://dscope.omicsbio.info/webserver.php
• 프로그램 관련 설명 논문: https://www.biorxiv.org/content/10.1101/2021.01.30.428971v1 
• Molphase Molecular Condensation Prediction (ntu.edu.sg)

실험항체 

•  Agrisera_ Antibodies for research (agrisera.com)
• PHYTO_AB_PhytoAB-Antibody Manufacturer for Plant Science

국제 연구기관

• Academia Sinica  https://www.sinica.edu.tw/en